Plantcare cis regulatory element database
WebFeb 1, 1999 · The in-silico promoter analysis using PlantCARE (Lescot et al. 2002) and PLACE (Higo et al. 1999) indicated several cis-regulatory elements involved in plant development, hormonal... WebPlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silicoanalysis of promoter sequences Magali Lescot, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé and Stephane Rombauts Nucleic Acids Res. 2002 Jan 1;30(1):325-327.
Plantcare cis regulatory element database
Did you know?
WebApr 24, 2006 · Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, … WebOct 11, 2024 · Multiple types of regulatory elements derived from high-throughput assays and genome comparison. Genome-wide regulatory interactions curated from literature and inferred by combining TF binding motifs and regulatory elements. ATRM - Architectures and evolutionary features of plant transcription regulatory systems.
WebPlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. PlantCARE، یک پایگاهداده از عناصر تنظیمکننده فعالیت سیس و یک … Web51 3.1.4 PlantCARE PlantCARE is database of plant specific cis-Acting regulatory elements in the promoter regions (Lescot et al., 2002). It generates a sequ ence analysis output on a dynamic webpage, on which TF binding sites are highlighted in the input sequence.
WebApr 9, 2024 · The sequences 2000 bp upstream of the start codon were selected as the promoters for cis-regulatory elements analysis. A total of 50 elements were identified in the promoters of CqTPSs and CqTPPs (Figure 3A,B). The cis-acting elements are classified into five categories, including Light Response, Plant Hormone, Plant Growth, Stress Response … WebPlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and …
WebNov 26, 2024 · The selected GRAS genes were subjected to in silico analysis for cis-regulatory elements in their putative promoter regions (sequence retrieved from about ≤1kb upstream region). This was performed in PlantCARE database and the figure was prepared by mapping the stress regulatory elements in the each of the sequences.
WebABSTRACT PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus … cssi louisianaWebPlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. PlantCARE، یک پایگاهداده از عناصر تنظیمکننده فعالیت سیس و یک پورتال برای تحلیل silico توالی راهانداز ... css image above divWebThe Plant Promoter Analysis Navigator (PlantPAN; http://PlantPAN2.itps.ncku.edu.tw) provides an informative resource for detecting transcription factor binding sites (TFBSs), corresponding TFs, and other important regulatory elements (CpG islands and tandem repeats) in a promoter or a set of promoters in plants. css ile div ortalamaWebNational Center for Biotechnology Information marco haltiner bielWebThe B-box proteins (BBXs) are a family of zinc-finger transcription factors with one/two B-Box domain(s) and play important roles in plant growth and development as well as stress responses. Wolfberry (Lycium barbarum L.) is an important traditional medicinal and food supplement in China, and its genome has recently been released. However, … css il ponteWebDatabase of regulatory factors (transcription factor, histone, and other DNA-binding protein) and binding site ... It is not only efficient to investigate critical cis-and trans-regulatory elements in plant promoters, but also reconstruct high-confidence relationships of TF-targets under a specific condition. Confidently, the PlantPAN 3.0 will ... marco guzzi poesieWebJul 15, 2024 · Although the functional mechanisms of many circRNAs have been revealed, how circRNAs are dysregulated in cancer remains elusive. CircRNAs are generated by a “back-splicing” process, which is regulated by different cis-regulatory elements and trans-acting proteins. Therefore, how these cis and trans elements change during … marco hannemann